BMRB Entry 11355

Title:
Solution structure of Splicing Factor Motif in Pre-mRNA splicing factor 18 (hPRP18)
Deposition date:
2010-09-07
Original release date:
2011-09-07
Authors:
He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.
Citation:

Citation: He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.. "Solution structure of Splicing Factor Motif in Pre-mRNA splicing factor 18 (hPRP18)"  .

Assembly members:

Assembly members:
SFM domain, polymer, 76 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P050801-10

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts309
15N chemical shifts65
1H chemical shifts494

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1SFM domain1

Entities:

Entity 1, SFM domain 76 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYTHRSERSER
2   ASNPROVALLEUGLULEUGLULEUALAGLU
3   GLULYSLEUPROMETTHRLEUSERARGGLN
4   GLUVALILEARGARGLEUARGGLUARGGLY
5   GLUPROILEARGLEUPHEGLYGLUTHRASP
6   TYRASPALAPHEGLNARGLEUARGLYSILE
7   GLUILELEUTHRPROGLUVALASNLYSGLY
8   SERGLYPROSERSERGLY

Samples:

sample_1: SFM domain, [U-13C; U-15N], 0.8 mM; phosphate buffer NA 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio F. - processing

NMRView v5.0.4, Johnson B.A. - data analysis

Kujira v0.9321, Kobayashi N. - data analysis

CYANA v1.0.8, Guntert P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAC28933 BAE22619 BAE22717 BAE24112 BAG37337
EMBL CAH90004
GB AAB41490 AAF44715 AAH00794 AAH04573 AAH58631
REF NP_001068791 NP_001124950 NP_001231788 NP_001247713 NP_001296236
SP Q2HJ41 Q5RE03 Q8BM39 Q99633 Q9JKB8
TPG DAA23561
AlphaFold Q9JKB8 Q99633 Q5RE03 Q2HJ41 Q8BM39

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks